Open Source at Harvard

Repositories

GitHub

Berkman Klein Center for Internet & Society

berkmancenter/amber_apache

Amber module for Apache

https://github.com/berkmancenter/amber_apache

berkmancenter/amber_common

Common code and documentation for the Amber project

https://github.com/berkmancenter/amber_common

berkmancenter/amber_drupal

Amber module for Drupal

https://github.com/berkmancenter/amber_drupal

berkmancenter/amber_nginx

Amber module for Nginx

https://github.com/berkmancenter/amber_nginx

berkmancenter/amber_wordpress

Amber plugin for Wordpress

https://github.com/berkmancenter/amber_wordpress

berkmancenter/blog_network_stats

A wordpress plugin to aggregate data about blogs into a single table.

https://github.com/berkmancenter/blog_network_stats

berkmancenter/bookanook

https://github.com/berkmancenter/bookanook

berkmancenter/brkmn

The dirt-simple URL shortener at brk.mn

https://github.com/berkmancenter/brkmn

berkmancenter/category_subscriptions

A wordpress plugin that allows for per-user category subscriptions.

https://github.com/berkmancenter/category_subscriptions

berkmancenter/classifurlr

Given request & response data, attempts to determine likelihood that page is available vs. down or blocked.

https://github.com/berkmancenter/classifurlr

berkmancenter/curarium

The Curarium is a collection of collections. It is a platform which leverages the power of the crowd in order to annotate, curate, and augment works within and beyond their respective collections, with the aim of constructing sharable, media-rich stories and elaborate arguments about individual items as well as groups of items in our corpora.

https://github.com/berkmancenter/curarium

berkmancenter/dotplot

Telling a story through dots

https://github.com/berkmancenter/dotplot

berkmancenter/eda

Emily Dickinson Archive platform

https://github.com/berkmancenter/eda

berkmancenter/fair_use_tool

Creative Rights fair use tool for determining copyright usage.

https://github.com/berkmancenter/fair_use_tool

berkmancenter/feed-abstract

RSS Feed abstraction library using ruby standard lib classes.

https://github.com/berkmancenter/feed-abstract

berkmancenter/hei

A tag heavy development project registry.

https://github.com/berkmancenter/hei

berkmancenter/internet_monitor

The Internet Monitor is a research project to evaluate, describe, and summarize the means, mechanisms, and extent of Internet content controls and Internet activity around the world.

https://github.com/berkmancenter/internet_monitor

berkmancenter/lumendatabase

The Lumen Database collects and analyzes legal complaints and requests for removal of online materials.

https://github.com/berkmancenter/lumendatabase

berkmancenter/mediacloud

Media Cloud is an open source, open data platform that allows researchers to answer quantitative questions about the content of online media.

https://github.com/berkmancenter/mediacloud

berkmancenter/namae

Namae (名前) parses personal names and splits them into their component parts.

https://github.com/berkmancenter/namae

berkmancenter/question_tool

A web application to propose and vote on questions on a particular subject.

https://github.com/berkmancenter/question_tool

berkmancenter/redmine_app_tracker

Redmine extension for tracking jobs, applicants, and job applications.

https://github.com/berkmancenter/redmine_app_tracker

berkmancenter/tagteam

Enhanced Social Tagging for Academic Communities

https://github.com/berkmancenter/tagteam

berkmancenter/tmulk

Twitter mass bulk download

https://github.com/berkmancenter/tmulk

berkmancenter/wiki-uturn

Wiki Reversion Tool

https://github.com/berkmancenter/wiki-uturn

China Biographical Database Project

cbdb-project/crop_books_by_lines

crop books by lines or blanks

https://github.com/cbdb-project/crop_books_by_lines

cbdb-project/reg-cpp

regular expression replacer

https://github.com/cbdb-project/reg-cpp

Harvard University - Center For Geographic Analysis

cga-harvard/geonode

Harvard WorldMap is a heavily modified fork of GeoNode 1.4 which has recently been migrated to GeoNode 2.10. WorldMap is being made available by Harvard’s Center for Geographic Analysis to lower the barrier for scholars and others who wish to explore, visualize, edit, collaborate with, and publish geospatial information.

https://github.com/cga-harvard/geonode

cga-harvard/Hypermap-Registry

Hypermap Registry, remote map services made easy for your SDI

https://github.com/cga-harvard/Hypermap-Registry

cga-harvard/hhypermap-bop

HHypermap BOP – Harvard Hypermap, Billion Object Platform (using Apache Solr)

https://github.com/cga-harvard/hhypermap-bop

Center for International Development at Harvard University

cid-harvard/aid-explorer

Aid data explorer which can be seen at: http://www.atlas.cid.harvard.edu/aidxp

https://github.com/cid-harvard/aid-explorer

cid-harvard/atlas-playbooks

Ansible playbooks and Vagrantfile for the Atlas of Economic Complexity

https://github.com/cid-harvard/atlas-playbooks

cid-harvard/atlas-subnational-api

Subnational atlas API backend

https://github.com/cid-harvard/atlas-subnational-api

cid-harvard/atlas-subnational-frontend

https://github.com/cid-harvard/atlas-subnational-frontend

cid-harvard/atlas_core

https://github.com/cid-harvard/atlas_core

cid-harvard/classifications

Various industry and product classifications that we took from original sources and cleaned to be computer-readable

https://github.com/cid-harvard/classifications

cid-harvard/ecomplexity

https://github.com/cid-harvard/ecomplexity

cid-harvard/pandas-to-postgres

Copy Pandas DataFrames and HDF5 files to PostgreSQL database

https://github.com/cid-harvard/pandas-to-postgres

cid-harvard/product-space

Customizable and interactive product space

https://github.com/cid-harvard/product-space

cid-harvard/py-ecomplexity

Python package to compute economic complexity and associated variables

https://github.com/cid-harvard/py-ecomplexity

cid-harvard/subnational-playbooks

Playbooks for the colombia, mexico, peru atlas

https://github.com/cid-harvard/subnational-playbooks

cid-harvard/visualization-notebook-templates

A set of iPython notebooks that can be used to generate some of the most common atlas-style visualizations with datasets in stata or csv

https://github.com/cid-harvard/visualization-notebook-templates

CS50

cs50/check50

This is check50, a command-line program with which you can check the correctness of your programs.

https://github.com/cs50/check50

cs50/cli

https://github.com/cs50/cli

cs50/cli50

This is CS50’s command-line interface.

https://github.com/cs50/cli50

cs50/compare50

This is compare50, a fast and extensible plagiarism detection tool.

https://github.com/cs50/compare50

cs50/jekyll-theme-cs50

This is @cs50’s theme for Jekyll. Inspired by https://github.com/poole/hyde.

https://github.com/cs50/jekyll-theme-cs50

cs50/libcs50

CS50 Library for C

https://github.com/cs50/libcs50

cs50/php-cs50

https://github.com/cs50/php-cs50

cs50/python-cs50

This is CS50’s library for Python.

https://github.com/cs50/python-cs50

cs50/render50

https://github.com/cs50/render50

cs50/server

https://github.com/cs50/server

cs50/style50

https://github.com/cs50/style50

cs50/submit50

This is submit50, CS50’s command-line tool for submitting problems.

https://github.com/cs50/submit50

DRSC

DRSC-FG/gene2function

https://github.com/DRSC-FG/gene2function

Farhat Laboratory

farhat-lab/gentb-site

The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens

https://github.com/farhat-lab/gentb-site

Harvard University Faculty of Arts & Sciences Research Computing

fasrc/helmod

Harvard Extensions for Lmod deployment

https://github.com/fasrc/helmod

FilteredPush Project

FilteredPush/event_date_qc

DataQuality library for dwc:eventDate and other dwc:Event terms.

https://github.com/FilteredPush/event_date_qc

FilteredPush/FP-KurationServices

https://github.com/FilteredPush/FP-KurationServices

glue-viz

glue-viz/glue

Linked Data Visualizations Across Multiple Files

https://github.com/glue-viz/glue

Harvard University Division of Continuing Education

harvard-dce/canvas-docker

Containerized Canvas instance for dev/testing

https://github.com/harvard-dce/canvas-docker

harvard-dce/dce_lti

An engine to simplify LTI Authentication for rails applications

https://github.com/harvard-dce/dce_lti

harvard-dce/django-canvas-api-token

A reusable django app for generating Canvas API user oauth tokens

https://github.com/harvard-dce/django-canvas-api-token

harvard-dce/hola_mundo

An LTI app allowing students in a course to introduce themselves via webcam-captured youtube videos

https://github.com/harvard-dce/hola_mundo

harvard-dce/panopto-cli

Command-line tool for interacting with the Panopto SOAP API

https://github.com/harvard-dce/panopto-cli

harvard-dce/pytest-ghostinspector

pytest plugin for discovering & executing https://ghostinspector.com tests

https://github.com/harvard-dce/pytest-ghostinspector

harvard-dce/python-docker-test

TestCase mixin for executing functional tests against a live docker container

https://github.com/harvard-dce/python-docker-test

Harvard Edtech

harvard-edtech/caccl

The Canvas App Complete Connection Library (CACCL) is an all-in-one library for building Canvas-integrated apps. By handling LTI, authorization, and api for you, CACCL makes building Canvas-integrated tools quick and easy. Keywords: Canvas LMS Instructure API LTI Authorization EdTech Education

https://github.com/harvard-edtech/caccl

harvard-edtech/caccl-api

A class that defines a set of smart Canvas endpoints that actually behave how you’d expect them to.

https://github.com/harvard-edtech/caccl-api

harvard-edtech/caccl-lti

Validates and parses LTI launch requests.

https://github.com/harvard-edtech/caccl-lti

harvard-library

harvard-library/acorn

A COnservation Records Network

https://github.com/harvard-library/acorn

harvard-library/archivesspace-checker

A small website for checking EADs against local standards via schematron

https://github.com/harvard-library/archivesspace-checker

harvard-library/archivesspace-preprocessor

Preprocessor for EAD files to prepare them for ingest into Archivesspace

https://github.com/harvard-library/archivesspace-preprocessor

harvard-library/aspace-import-excel

Import resources, archival objects, etc. into ArchivesSpace using Excel spreadsheet files

https://github.com/harvard-library/aspace-import-excel

harvard-library/aspace-linkomatic

A plugin to help automate the insertion of links to digitized records into Archives Space.

https://github.com/harvard-library/aspace-linkomatic

harvard-library/aspace-utils

Bulk ingest script for ArchivesSpace, analysis script that processes logs from afforementioned.

https://github.com/harvard-library/aspace-utils

harvard-library/ClassRequestTool

An application for scheduling class visits to archives and special collections.

https://github.com/harvard-library/ClassRequestTool

harvard-library/devise_harvard_auth_proxy

Devise plugin to use the Harvard authentication proxy.

https://github.com/harvard-library/devise_harvard_auth_proxy

harvard-library/geosearch_solr_prep

geosearch_solr_prep

https://github.com/harvard-library/geosearch_solr_prep

harvard-library/harvard-ead-importer

ArchivesSpace plugin overriding EAD Importer to implement specific fixes.

https://github.com/harvard-library/harvard-ead-importer

harvard-library/inscriptio

An app to help manage the reservation of carrels and other reservable library resources

https://github.com/harvard-library/inscriptio

harvard-library/librarycloud

Harvard University Library Cloud API

https://github.com/harvard-library/librarycloud

harvard-library/linkomatic

Automatically adds NRS links to digitized records in EAD

https://github.com/harvard-library/linkomatic

harvard-library/list_view

A tool for displaying ordered lists of links.

https://github.com/harvard-library/list_view

harvard-library/lts-lti-reserves

The Reserves Tool as seen/used via Canvas

https://github.com/harvard-library/lts-lti-reserves

harvard-library/metadata_server

Django/Elasticsearch IIIF Metadata server

https://github.com/harvard-library/metadata_server

harvard-library/schematronium

A library for running schematrons over XML files

https://github.com/harvard-library/schematronium

harvard-library/spotlight-oaipmh-resources

An OAI-PMH harvester plugin for Spotlight

https://github.com/harvard-library/spotlight-oaipmh-resources

Harvard Library Innovation Laboratory

harvard-lil/h2o

H2O is a web app for creating and reading open educational resources, primarily in the legal field

https://github.com/harvard-lil/h2o

harvard-lil/lil-nudgebot

https://github.com/harvard-lil/lil-nudgebot

harvard-lil/perma

Indelible links

https://github.com/harvard-lil/perma

harvard-lil/perma-payments

https://github.com/harvard-lil/perma-payments

Harvard Library

harvard-lts/fits

File Information Tool Set

https://github.com/harvard-lts/fits

harvard-lts/FITSservlet

A web application to expose FITS as a service.

https://github.com/harvard-lts/FITSservlet

Harvard University / iCommons

Harvard-University-iCommons/canvas_account_admin_tools

https://github.com/Harvard-University-iCommons/canvas_account_admin_tools

Harvard-University-iCommons/django-auth-lti

https://github.com/Harvard-University-iCommons/django-auth-lti

Harvard Programming Languages Research

HarvardPL/shill

Scripting with Least Privilege

https://github.com/HarvardPL/shill

Harvard Business Review Group Technology Team

HBRGTech/daisy

daisy is a vagrant and grunt-powered Pattern Lab, derivative work from hbr.org’s 2014 redesign.

https://github.com/HBRGTech/daisy

Institute for Quantitative Social Science

IQSS/DataTaggingLibrary

Language tools for DataTags (Decision graph variant). Including the embeddable runtime engine

https://github.com/IQSS/DataTaggingLibrary

IQSS/dataverse

Open source research data repository software

https://github.com/IQSS/dataverse

IQSS/redmine2github

Scripts to migrate redmine tickets to github issues

https://github.com/IQSS/redmine2github

IQSS/TwoRavens

See https://github.com/tworavens/tworavens for current repository for this project and http://2ra.vn for project pages.

https://github.com/IQSS/TwoRavens

IQSS/UNF

Universal Numerical Fingerprint

https://github.com/IQSS/UNF

IQSS/Zelig

A statistical framework that serves as a common interface to a large range of models

https://github.com/IQSS/Zelig

kurator-org

kurator-org/ffdq-api

An API for making Fitt4Use Framework assertions available to Data Quality reports.

https://github.com/kurator-org/ffdq-api

kurator-org/kurator-akka

Provenance-enabled workflow platform and toolkit to curate biodiversity data https://doi.org/10.5281/zenodo.1068311

https://github.com/kurator-org/kurator-akka

kurator-org/kurator-ffdq

FFDQ framework for data quality assertions

https://github.com/kurator-org/kurator-ffdq

kurator-org/kurator-fp-validation

Biodiversity data validation actors and workflows derived from the FP-Akka package

https://github.com/kurator-org/kurator-fp-validation

kurator-org/kurator-validation

Biodiversity data validation services and actors for the Kurator toolkit.

https://github.com/kurator-org/kurator-validation

kurator-org/kurator-web

https://github.com/kurator-org/kurator-web

MCZbase

MCZbase/DataShot_DesktopApp

Desktop application client intended to support an object-precapture-image-data workflow for capture of natural science collections data. See the wiki (https://github.com/MCZbase/DataShot_DesktopApp/wiki) for user documentation, or the README below for developer documentation.

https://github.com/MCZbase/DataShot_DesktopApp

MCZbase/datashot_ee

https://github.com/MCZbase/datashot_ee

MCZbase/datashot_ejb

https://github.com/MCZbase/datashot_ejb

MCZbase/datashot_web

https://github.com/MCZbase/datashot_web

MCZbase/DDL

Build Scripts for all Database Objects in MCZbase

https://github.com/MCZbase/DDL

MCZbase/eDecViewer

USFWS eDec generation tool for MCZbase and Arctos

https://github.com/MCZbase/eDecViewer

MCZbase/MCZbase

Arctos branch in use by the Museum of Comparative Zoology, Harvard University https://doi.org/10.5281/zenodo.891420

https://github.com/MCZbase/MCZbase

MCZbase/PreCapture

PreCapture application used for creating human and machine readable labels for natural science collections storage containers to support object to image to data workflows. Used by the MCZ and the NEVP TCN.

https://github.com/MCZbase/PreCapture

onnela-lab

onnela-lab/HX_python_for_research

https://github.com/onnela-lab/HX_python_for_research

OpenSDP

OpenSDP/college-going-r

OpenSDP College-Going Pathways (R)

https://github.com/OpenSDP/college-going-r

OpenSDP/college-going-stata

OpenSDP College-Going Pathways (Stata)

https://github.com/OpenSDP/college-going-stata

OpenSDP/nearly-unique-r

OpenSDP data cleaning tutorial on applying decision rules

https://github.com/OpenSDP/nearly-unique-r

OpenSDP/nearly-unique-stata

OpenSDP data cleaning tutorial in Stata on applying decision rules

https://github.com/OpenSDP/nearly-unique-stata

OpenSDP/dataviz-r

OpenSDP data visualization tutorials in R for education data analysts, including R Shiny tutorial

https://github.com/OpenSDP/dataviz-r

OpenSDP/faketucky

OpenSDP Faketucky College-Going Dataset (Stata and R)

https://github.com/OpenSDP/faketucky

OpenSDP/OpenSDPsynthR

Codebase to generate simulated data for OpenSDP project

https://github.com/OpenSDP/OpenSDPsynthR

OpenSDP/template-r

OpenSDP Analysis Template (R)

https://github.com/OpenSDP/template-r

OpenSDP/template-stata

OpenSDP Analysis Template (Stata)

https://github.com/OpenSDP/template-stata

penzance

penzance/canvas_python_sdk

Canvas Python SDK

https://github.com/penzance/canvas_python_sdk

penzance/harvard-data-tools

https://github.com/penzance/harvard-data-tools

Refinery Platform

refinery-platform/refinery-platform

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.

https://github.com/refinery-platform/refinery-platform